PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005321
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 523aa    MW: 56840.1 Da    PI: 7.5123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005321genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-163178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++v++ G g+W+++ r  g++R++k+c++rw ++l
        Cla005321 31 KGPWTASEDAILMEYVRKNGEGNWNAVQRNSGLNRCGKSCRLRWANHL 78
                     79******************************************9986 PP
2Myb_DNA-binding50.45.1e-1684127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++
        Cla005321  84 KGAFSPEEERLILQLHAKYGNK-WARMAAQLP-GRTDNEIKNYWNT 127
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0142678IPR017930Myb domain
SuperFamilySSF466891.8E-3028125IPR009057Homeodomain-like
SMARTSM007174.1E-143080IPR001005SANT/Myb domain
PfamPF002491.1E-143178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-233285IPR009057Homeodomain-like
CDDcd001672.82E-103378No hitNo description
PROSITE profilePS5129426.15679133IPR017930Myb domain
SMARTSM007177.5E-1783131IPR001005SANT/Myb domain
PfamPF002492.2E-1584127IPR001005SANT/Myb domain
CDDcd001671.66E-1286127No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2586132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MTPNTAVGTT GNGGGGSGGG GGGGGEGGLK KGPWTASEDA ILMEYVRKNG EGNWNAVQRN  60
SGLNRCGKSC RLRWANHLRP NLKKGAFSPE EERLILQLHA KYGNKWARMA AQLPGRTDNE  120
IKNYWNTRVK RRQRQGLPLY PHDIKPMAAQ SQPTTPTSPL PTTSPTTPTS TPTTPTGGGG  180
SSIFQFHSPT TMHSHSPLSS PHQHEPHTFT SFPLIPPNSF TFHRPPPILA TPVRFKHFRT  240
NNNNNHHHAA VNFSPHHHPT DLMVHSPPPQ QQQLSRVDSF QFPAMTLATT SSSSSPHILH  300
NAHSGMVMSN CVGGLKQDLP SSTQFHQINV PHTALTFNDE KISSGMSFSS AGLLEDLLDE  360
AQVLACDANS NNPKLTSPSP SLVSPEEQQL FDGFHKLAQD NDTCLFLSTK AKEEGGGGGE  420
GHGICGSEDW SKLLNVAMPS NMQLPQWYTN NKEEHQQISY GGQTNSSILP IDHHHHHNDN  480
VVGGLDVQHI ATLFPVTTTE PQDQSARTNN NTSCPWDNLP GIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29291325107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818590.0LN681859.1 Cucumis melo genomic scaffold, anchoredscaffold00078.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016903025.10.0PREDICTED: transcription factor MYB35
TrEMBLA0A1S4E4X60.0A0A1S4E4X6_CUCME; transcription factor MYB35
STRINGXP_004149363.10.0(Cucumis sativus)
STRINGXP_004167800.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.27e-69myb domain protein 101