 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cla005053 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
| Family |
LBD |
| Protein Properties |
Length: 202aa MW: 22001.1 Da PI: 6.4888 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla005053 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 137.5 | 4.6e-43 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lp+++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+aela++++e
Cla005053 38 PCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAE 137
7***********************************************************************************************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MESSEPKSSP TSTNLLSQSS PSSPSPPPSV QAAVVVSPCA ACKILRRRCA EKCVLAPYFP 60
PSDPLKFTIA HRVFGASNII KLLQDLPDSQ RADAVSSLVY EASARIRDPV YGCAGAICQL 120
QKQINELQAE LAKTQAELVN IHCHQANLVA LICKELAQTP PPMSPLPDHR SLDNNFNIAT 180
PQSYQGYTSL FEDSNIWDPL WT
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | LN681928 | 1e-152 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. |
| GenBank | LN713266 | 1e-152 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
