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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 19924.9 Da PI: 7.2686 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.6 | 1.4e-40 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C ++C l pyfp ++p kf ++h++FGasn++kll++lp+++r da++s+vyeA ar+rdP+yG++g i++lq+q++ l+ ela++++e Cla005052 14 PCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAE 113 7**********************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.378 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-40 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEKNEAHTVA VGSPCAACKI LRRRCRENCE LGPYFPPTEP LKFTIAHRVF GASNIIKLLQ 60 DLPKSQRADA VNSMVYEASA RIRDPIYGCA GSIFQLQKQI NDLQGELAKA QAEVLKMQCQ 120 QANLMTLICK ELAQMPQPPM YDHQPLNQNY NISSPQSYQT YSYLFEEGNI LEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-43 | 8 | 121 | 5 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-43 | 8 | 121 | 5 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 5e-93 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 5e-93 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147298.1 | 1e-107 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-61 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0A0LUS4 | 1e-106 | A0A0A0LUS4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161318.1 | 1e-108 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24500 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-64 | LOB domain-containing protein 1 |