PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cla004880

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 283aa MW: 30451.1 Da PI: 8.3984

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla004880	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.3	4.7e-40	55	115	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rknk+ss Cla004880 55 KEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSS 115 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	47	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-34	57	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGIDYCGFDD QFAGGGVVVK QMEGGGSSSS SKPNNNNNNN NNNGNLLERK ARPQKEQALN 60 CPRCNSTNTK FCYYNNYSLS QPRYFCKACR RYWTEGGSLR NVPVGGGSRK NKRSSLSSSA 120 DKKINASDQN PKIIHHAHQD LNLAIFPPNN NNNNNTPPIP SSTSTSSSSH LLGSFMTAAP 180 AAGVFNGGGG FGLSELKPSS LSFSLEGFEN GGGYGDLHHN HHHHHHHHHH HQDQTAVMFP 240 MEELKQSNGR GEFEENRGGG GHGAGDNNSG GGFWNGMLGG GSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	2e-75	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	2e-75	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022973007.1	1e-115	dof zinc finger protein DOF2.5-like
Swissprot	Q8LAP8	3e-47	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A1S3AV39	2e-82	A0A1S3AV39_CUCME; dof zinc finger protein DOF4.6-like
STRING	XP_004174098.1	1e-83	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-36	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]