PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla004743

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB_related

Protein Properties

Length: 1364aa MW: 149399 Da PI: 7.6803

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla004743	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	934	974	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av +G++ ++ I+ ++g +++ qck ++ Cla004743 934 YWTDGEKSLFIEAVSVYGKN-FSMISTHVG-SKSADQCKVFFS 974 5***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.06E-14	708	768	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-4	716	766	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.367	720	771	IPR017884	SANT domain
SMART	SM00717	3.0E-5	721	769	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.13	930	981	IPR017884	SANT domain
SMART	SM00717	4.8E-7	931	979	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.52E-11	932	981	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-6	934	974	IPR001005	SANT/Myb domain
CDD	cd00167	9.26E-6	935	973	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-5	935	975	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1364 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHE RSEFLGAVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG 60 SWHVFSDEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY ARNGRGKADL LVKEIGKVIP 120 GQQVMGLRTM VVKGQHDKVD DVHGLGTNQR RDREYSASSS GWKPLKWTRS GGLSSRTSTS 180 SHSSSTKSIG ALDTNDRKSE TVLKNVSQIL SPSADPPECA MSSLPYDEAS VRKKPRLGWG 240 EGLAKYEKKK VEVPDGTAFT NVNAELTHSL DSSLIEKGLR GSGFTDCTSP ATPSSVISGS 300 SPGGDEKSPG KASSDNDVSN LHGSPGSGFQ NHYEGTSSVE KLDNFSIANL CSPLIQLLQS 360 NDSMSVDSTA LSKLLIYKNQ ISKVLETTES EIDLLENELK GLKSEGKGYF SFPLAFNSSL 420 VGYKYFEEQN DVTNTVATLP VVTSANTISK TMTQSTSDLA EVYDDVKEKD RSGRLDVKES 480 VIMKEKLTIS GCSVKDNIVA SVDNNSMSIK SEGVTLEPIS NDMYEYAEEG GDSVFDLILA 540 SNKESACKAS EALIKMLPAN DHKIDIWSTN VSSQNQCLME ERFAKRKRLL RFKERVITLK 600 FRAYQSLWKE SLHVPPVRKL RAKSQKKYQL SLWTNYSGYQ KNRSSIRFHM PSPAGNPNPV 660 SNTEILKHVS MQLSSPQIKQ YRRTLKMPAL VLDQKDKMGS RFISNNGLVE NPCAVEKERT 720 MINPWTSEEK DVFMEKLECF GKDFGKIASF LDHKTTADCV EFYYKNHKSD CFEKTKKLEF 780 GKKAKSSTSN YLMTTGKKWN PETNAASLDL LGAASTMTAR AHKYSSSRSG GRTAYHTTQF 840 DDDLSERAKG FHSFGNEREK VAADVLAGIC GSLSSEAMGS CVTSNFNRGD GSQDLKSKKG 900 AATVVRRRLT TNVPRYVDDE IFSDESCGEM DPSYWTDGEK SLFIEAVSVY GKNFSMISTH 960 VGSKSADQCK VFFSKARKCL GLDLICSAKK MPDNGTGHDA DGGNGEAGVD TKDAIPCEWV 1020 GSQVVDDLPK SVTSISGGES ESPNLQSTHQ EVKESNQSSK TCSNAAVDAM VSDDACTRKD 1080 GSHSGFDDDC QSVNSANDKN GLVHEQQHVV VSDETVKEQG ISASVAASVG NGSDAETKRG 1140 NADTGTNKGD RADSHRADSS LMPLNSHLTS LPKEEQGRHH VRVHSRSLSD SERSSRNGDI 1200 KLFGQILTHS SSVPSSKSGS NENGNRTTEL HKFKRRLKVN SHGNLSTAKF DRKNSPAQDE 1260 DTPSRSYGIW DGNRIRTGLS SLPDPTTLLS SYPTFNHLSK STSSLIEQQP LPPSCKEQKS 1320 NGGLQMLEVN SSKEVVVEGI NVGENCNEDD IKLHCNKAAE GGGS

Sequence ? help Back to Top

Protein Sequence Length: 1364 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHE RSEFLGAVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG  60
SWHVFSDEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY ARNGRGKADL LVKEIGKVIP  120
GQQVMGLRTM VVKGQHDKVD DVHGLGTNQR RDREYSASSS GWKPLKWTRS GGLSSRTSTS  180
SHSSSTKSIG ALDTNDRKSE TVLKNVSQIL SPSADPPECA MSSLPYDEAS VRKKPRLGWG  240
EGLAKYEKKK VEVPDGTAFT NVNAELTHSL DSSLIEKGLR GSGFTDCTSP ATPSSVISGS  300
SPGGDEKSPG KASSDNDVSN LHGSPGSGFQ NHYEGTSSVE KLDNFSIANL CSPLIQLLQS  360
NDSMSVDSTA LSKLLIYKNQ ISKVLETTES EIDLLENELK GLKSEGKGYF SFPLAFNSSL  420
VGYKYFEEQN DVTNTVATLP VVTSANTISK TMTQSTSDLA EVYDDVKEKD RSGRLDVKES  480
VIMKEKLTIS GCSVKDNIVA SVDNNSMSIK SEGVTLEPIS NDMYEYAEEG GDSVFDLILA  540
SNKESACKAS EALIKMLPAN DHKIDIWSTN VSSQNQCLME ERFAKRKRLL RFKERVITLK  600
FRAYQSLWKE SLHVPPVRKL RAKSQKKYQL SLWTNYSGYQ KNRSSIRFHM PSPAGNPNPV  660
SNTEILKHVS MQLSSPQIKQ YRRTLKMPAL VLDQKDKMGS RFISNNGLVE NPCAVEKERT  720
MINPWTSEEK DVFMEKLECF GKDFGKIASF LDHKTTADCV EFYYKNHKSD CFEKTKKLEF  780
GKKAKSSTSN YLMTTGKKWN PETNAASLDL LGAASTMTAR AHKYSSSRSG GRTAYHTTQF  840
DDDLSERAKG FHSFGNEREK VAADVLAGIC GSLSSEAMGS CVTSNFNRGD GSQDLKSKKG  900
AATVVRRRLT TNVPRYVDDE IFSDESCGEM DPSYWTDGEK SLFIEAVSVY GKNFSMISTH  960
VGSKSADQCK VFFSKARKCL GLDLICSAKK MPDNGTGHDA DGGNGEAGVD TKDAIPCEWV  1020
GSQVVDDLPK SVTSISGGES ESPNLQSTHQ EVKESNQSSK TCSNAAVDAM VSDDACTRKD  1080
GSHSGFDDDC QSVNSANDKN GLVHEQQHVV VSDETVKEQG ISASVAASVG NGSDAETKRG  1140
NADTGTNKGD RADSHRADSS LMPLNSHLTS LPKEEQGRHH VRVHSRSLSD SERSSRNGDI  1200
KLFGQILTHS SSVPSSKSGS NENGNRTTEL HKFKRRLKVN SHGNLSTAKF DRKNSPAQDE  1260
DTPSRSYGIW DGNRIRTGLS SLPDPTTLLS SYPTFNHLSK STSSLIEQQP LPPSCKEQKS  1320
NGGLQMLEVN SSKEVVVEGI NVGENCNEDD IKLHCNKAAE GGGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	682	773	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	682	773	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681892	0.0	LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465673.1	0.0	PREDICTED: uncharacterized protein LOC103503311 isoform X1
TrEMBL	A0A1S3CQW3	0.0	A0A1S3CQW3_CUCME; uncharacterized protein LOC103503311 isoform X1
STRING	XP_008465673.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-127	MYB family protein