PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004422
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 651aa    MW: 71876.5 Da    PI: 5.5294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004422genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.64.8e-1242616341373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                l++lL++c+ea+ s++  l+++l+ +l  +asp+g +p++Rl+ay+teALa r++r +++++++ +p+e + + ++++ +al+l++evsPi+kf h+taN
  Cla004422 261 LISLLMACVEAIGSKNIGLINHLIDKLGSQASPRGsSPITRLIAYYTEALAVRVSRVWPQVFHITTPREYD-RMEDDTGTALRLLNEVSPIPKFIHFTAN 359
                5799*******************************99**************************99999997.5678888999****************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                +++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++l++L+vk++
  Cla004422 360 EMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALRLPFEFHA-VVDRLEDVRLWMLHVKEQ 454
                **************************************************....***************************.7***************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E++ Vn++lqlh++l +    +   +++L l++s++P +vv++eqea+hn++++  r++ +l+yy+a+fdsl+a+lp++s++r k+E + +grei+n++a
  Cla004422 455 ESVGVNCMLQLHKTLYDGNGGA--LRDFLGLIRSTNPSIVVMAEQEAEHNEPRLESRVTATLKYYAAIFDSLDASLPPDSSARLKIEDM-FGREIRNMIA 551
                ***************6554444..589**************************************************************.********** PP

       GRAS 300 cegaerrerhetlekWrerlee.aGFkpvpl.sekaakqaklllrkvk.sdgyrve...ee...sgslvlgWkdrpLvsvSaW 373
                ceg+er erh  ++kW++ +e+  G++ v + ++++  q + ll++++  +g++v    ee    ++++l+W+d+pL+svSaW
  Cla004422 552 CEGRERYERHVGFKKWKKDMEQqGGLQCVGIcDNRELLQTQFLLKMYSsAHGFKVTkieEEegaAQAICLTWEDQPLYSVSAW 634
                ********************98578****983556789**********99**99986643345566788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.255235606IPR005202Transcription factor GRAS
PfamPF035141.6E-121261634IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRNRLRSE AQPPFPACHL QLPTSMSTQR LDLPCSFSRS KDTSATARSP  60
SIRPVALSVE KQNIRLPPLS ATNQQIKQEF WNGKGKNLKR IAEQVGFDDD DSSINSAKRK  120
RECRDDAGDG LILSQFGGGG GGSFWFHQPD GDEEGICFLP GSEVISSPSP FFSEIADFGE  180
GNDGESSHVK AQEGSGSGSG SSSSSESERF ALRSRVTTEN VSAAATTVPE IGNGSSRNPS  240
YHHHQGSGLE NEREEEEGFE LISLLMACVE AIGSKNIGLI NHLIDKLGSQ ASPRGSSPIT  300
RLIAYYTEAL AVRVSRVWPQ VFHITTPREY DRMEDDTGTA LRLLNEVSPI PKFIHFTANE  360
MLLRAFEGKD RVHIIDFDIK QGLQWPSLFQ SLASRTNPPS HVRITGIGES KQELNETGDR  420
LAGFAEALRL PFEFHAVVDR LEDVRLWMLH VKEQESVGVN CMLQLHKTLY DGNGGALRDF  480
LGLIRSTNPS IVVMAEQEAE HNEPRLESRV TATLKYYAAI FDSLDASLPP DSSARLKIED  540
MFGREIRNMI ACEGRERYER HVGFKKWKKD MEQQGGLQCV GICDNRELLQ TQFLLKMYSS  600
AHGFKVTKIE EEEGAAQAIC LTWEDQPLYS VSAWSAAEVS GSSSSFNHPT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-612496357379Protein SCARECROW
5b3h_A3e-612496356378Protein SCARECROW
5b3h_D3e-612496356378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148280.20.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0A0L1Z20.0A0A0A0L1Z2_CUCSA; GRAS family transcription factor
STRINGXP_004162787.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein