PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla004362

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB

Protein Properties

Length: 273aa MW: 30128.5 Da PI: 7.5515

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla004362	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.5e-19	26	71	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W++I+ ++ gR++k+c++rw + Cla004362 26 KGSWSPQEDATLIKLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 71 799***************************.*********985 PP
2	Myb_DNA-binding	53.6	5.3e-17	78	120	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +v+a++ +G++ W+tIar ++ gRt++ +k++w++ Cla004362 78 PFTPAEDAVIVQAHAVHGNK-WSTIARLLP-GRTDNAIKNHWNST 120 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.218	21	76	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-30	23	117	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-21	25	74	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-16	25	74	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-18	26	71	IPR001005	SANT/Myb domain
CDD	cd00167	3.14E-15	28	70	No hit	No description
SMART	SM00717	2.6E-13	75	123	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.393	77	125	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-21	78	122	IPR009057	Homeodomain-like
CDD	cd00167	1.54E-11	78	121	No hit	No description
Pfam	PF00249	9.5E-14	78	120	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MVLIGIALPN HNNNSNTNTT NNNRVKGSWS PQEDATLIKL VEQHGPRNWS LISTGIPGRS 60 GKSCRLRWCN QLSPADRPFT PAEDAVIVQA HAVHGNKWST IARLLPGRTD NAIKNHWNST 120 LRRRRDADLS SDSTAFLKRP SYEVSRSASD DDDNDDDDSV ASLKRKCFER DGGGGPETSL 180 RLSLPGEVVV PTAVDMKVKE EVTVESEKND GRQRVTAAAD EKRNRKREVD ETCLATIMQR 240 MIAQEVRNYI DSLRAHGGLG IGPGLDPTVQ ETP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-35	25	124	3	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	7e-35	25	124	57	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	7e-35	25	124	57	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-35	25	124	3	104	C-Myb DNA-Binding Domain
1msf_C	2e-35	25	124	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681905	0.0	LN681905.1 Cucumis melo genomic scaffold, anchoredscaffold00033.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148201.1	1e-144	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A0A0KQJ2	1e-143	A0A0A0KQJ2_CUCSA; Uncharacterized protein
STRING	XP_004163135.1	1e-143	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11600	29	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-45	myb domain protein 73