PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004188
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 876aa    MW: 99758.6 Da    PI: 8.275
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004188genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.2e-09286331146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r++WTt Ed+ l+  ++q G ++W  Ia   g++Rt+ qc sr+q 
        Cla004188 286 RDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQR 331
                      789*****************************************96 PP
2Myb_DNA-binding37.64.9e-12374419147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T++Ed +l+ av ++G+++W++ a+ ++ gR   qc++rw++ 
        Cla004188 374 RGHFTPDEDSRLKIAVLLFGPKNWNKTAEFLP-GRNQVQCRERWFNC 419
                      899*****************************.***********996 PP
3Myb_DNA-binding49.41.1e-15426470147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  WT+eEd++l  a++++G   W+++a++++  Rt+++c+ rw k+
        Cla004188 426 RCEWTEEEDLRLEIAIQEHGYS-WAKVAACVP-SRTDNDCRRRWKKL 470
                      568*****************99.*********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.564181280IPR017877Myb-like domain
SMARTSM007170.23185282IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-8188204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-8253293IPR009057Homeodomain-like
SuperFamilySSF466894.27E-5254298IPR009057Homeodomain-like
PROSITE profilePS5129412.094281337IPR017930Myb domain
SMARTSM007176.6E-5285335IPR001005SANT/Myb domain
SuperFamilySSF466891.63E-14287363IPR009057Homeodomain-like
PfamPF139212.6E-8289350No hitNo description
Gene3DG3DSA:1.10.10.608.8E-13294344IPR009057Homeodomain-like
PROSITE profilePS500905.529334362IPR017877Myb-like domain
SMARTSM007172.4E-10338422IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-4345364IPR009057Homeodomain-like
PROSITE profilePS5129414.442369420IPR017930Myb domain
SuperFamilySSF466891.53E-25371467IPR009057Homeodomain-like
PfamPF002491.1E-10374419IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-18375426IPR009057Homeodomain-like
CDDcd001679.62E-8377418No hitNo description
PROSITE profilePS5129423.973421475IPR017930Myb domain
SMARTSM007173.6E-14425473IPR001005SANT/Myb domain
PfamPF002491.4E-14426470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-17427470IPR009057Homeodomain-like
CDDcd001672.88E-11428471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MLAFEKGSLP KAALAFIDAI KKNRSQQKFI RSKMIHLEAR IEENKKLRKR FKILKDFQGS  60
CKRRTTCALS QMIDPRVQLI SAAKPQAKDS SKAKEDLDHP LWDGQYVRMM WSLFLQESDV  120
SFAGQRDVCA TIEDFLLHSP FREKGHFLWL AGGKDKRLSA MHYGPAENSH VACYRMALMK  180
FPRVDRKKWS VVERENLGKG IRQQFQEMVL QISVDQISGL QGFSADSDDL DNILASIKDL  240
DITPEKIREF LPKVNWDKLA SMYLRGRSGA ECEARWLNFE DPLINRDPWT TSEDKNLLFT  300
IQQKGLNNWI EIAVSSGTNR TPFQCLSRYQ RSLNASILKR EWTKDEDDKL RAAVATFGLG  360
DWWKKSLDPA RTKRGHFTPD EDSRLKIAVL LFGPKNWNKT AEFLPGRNQV QCRERWFNCL  420
DPSLRRCEWT EEEDLRLEIA IQEHGYSWAK VAACVPSRTD NDCRRRWKKL FPNEVPLLQE  480
ARKIQKAALI SNFVDRESER PALGPTEFRP RPNTDLLCNS VDPRPAPKRN VKTSDAPKKR  540
KSNCQRNQAD VTAQAGIANN TSSVPEEVKS LKPQRKQNRH GAYTAEGVPE LCPNSEWCAK  600
QSLDTQSLGV QLNSKESEGT NSDCIETVDE NGMEVFENKV AEKLSERDVC FSEPEAIQNS  660
TGSSGVSVLS EMTNDMDEYN PSILPDTTLL ASITVDDLKE LKRKSVADRD LDDCNSFSLP  720
CSDLELRTID KEGVDSYSMD EFTDKSHGVC KPPHTRRKKN SKTSSKSQDH SFVSCQQVEL  780
ERSGTNEPRH HNQSKKRKHN STNTNLEAVE EVDDCTLVGF LQKRLKRTTT TNDKKVDCSS  840
STPLEVDTDD NDPTLASFLN KLKRKKHQPS SGGELN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-242894679151MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-242894679151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818581e-177LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132601e-177LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650583.10.0PREDICTED: uncharacterized protein LOC101216287
RefseqXP_011650584.10.0PREDICTED: uncharacterized protein LOC101216287
RefseqXP_011650585.10.0PREDICTED: uncharacterized protein LOC101216287
TrEMBLA0A0A0L2R20.0A0A0A0L2R2_CUCSA; Uncharacterized protein
STRINGXP_004134260.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-166myb domain protein 4r1