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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla003994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24257.1 Da PI: 4.3247 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.9 | 1e-35 | 13 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+++Cv+ap f ++ +++fa+vhk+FGasnv+kll +lp + r++a+ +++yeA r+rdP yG+v++i++lqq++++l++e++ l++ Cla003994 13 SCGACKFLRRKCSDQCVFAPFFSYDEaTSHFAAVHKVFGASNVSKLLLHLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGS 112 6**********************98868*******************************************************************99988 PP DUF260 100 e 100 + Cla003994 113 Q 113 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.582 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-33 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTGLNSSNFS SSSCGACKFL RRKCSDQCVF APFFSYDEAT SHFAAVHKVF GASNVSKLLL 60 HLPIHIRSHA ALTVAYEALE RMRDPTYGCV AHIFALQQEV ASLQEEIEIL GSQIANFTAT 120 GGSVAGVENP FIDQLQVSQQ LKDFGMMNRD DYQNELLSEL PYQSFDNIQN DNNGQMISPL 180 FCLGEEDGVF GFCSSNDVVE RSACDVSFEE SFVGYPWVVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-31 | 6 | 129 | 4 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-31 | 6 | 129 | 4 | 124 | LOB family transfactor Ramosa2.1 |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681897 | 1e-104 | LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063. | |||
GenBank | LN713264 | 1e-104 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147712.1 | 1e-137 | PREDICTED: LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 2e-57 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A0A0KNX8 | 1e-135 | A0A0A0KNX8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161921.1 | 1e-137 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-58 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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