PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003441
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 369aa    MW: 41408 Da    PI: 6.1719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003441genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
        Cla003441 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.15.5e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++ ++++lG++ W+ Ia+ ++ gRt++++k++w++
        Cla003441  67 RGMFSQQEEDLIISLHELLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.883961IPR017930Myb domain
SuperFamilySSF466896.74E-2912108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-141461IPR001005SANT/Myb domain
CDDcd001675.27E-111761No hitNo description
PROSITE profilePS5129424.09162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2565116IPR009057Homeodomain-like
SMARTSM007175.4E-1466114IPR001005SANT/Myb domain
PfamPF002494.0E-1467110IPR001005SANT/Myb domain
CDDcd001671.11E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHELLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG  120
IDPNTHKPMI NIQEIKEKKI FEDKEFPQIP PVQGLGGGGG ISAAGNQGPA FLLSGTDYYD  180
GGLTVASMRD HFMNKQTLVD SLCYFEFQTG FDSCDYNNNN NDTNFETPYQ SNVQSFGFNS  240
VPSLTNSDHG SLSGTEFSDN SGSNMSNYGG FYMNNNNGVE NSTFCSWENE NNKLERLLEI  300
DVNNNNNNNN NNNNDGIKSE ELKRVTGGSS SMVDGQLIQS RSSLDFITYP LTSLSQQIST  360
ANFGAFHHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-174LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-174LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152489.20.0PREDICTED: transcription factor MYB86-like
SwissprotQ8LPH65e-80MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A0A0LRA30.0A0A0A0LRA3_CUCSA; Uncharacterized protein
STRINGXP_004157780.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.16e-80myb domain protein 86