PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003413
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 859aa    MW: 94107.2 Da    PI: 5.9277
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003413genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-182683457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Cla003413 26 YVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCpilaNIEPKQIKVWFQNRRCREKQ 83
               5789****************************************************97 PP
2START145.45.5e-461673722204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee ++++++ka  ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v   +    +e+l+d++ W +++++ e+  +  +g  g+++l +++ +
  Cla003413 167 IAEEILAAFLSKAMGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVVLLQI---AEILKDRPSWFRDCRSLEVFTTFPTGdgGTIELVYTQVY 263
                789999**********************************************977666...88888888******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+++Ry+r+l+ g +v++++S++     p+    s++vRae+lpSg+li+p+++g+s +++v+h +l+   +++++r+l++s+ a ++k+
  Cla003413 264 APTTLAPaRDFWTLRYTRTLENGNLVVCERSLSGSGTGPNaasASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPGGVPEVVRPLYESSKAVAQKM 363
                *********************************988888889999******************************************************* PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                + a+l++ +
  Cla003413 364 TIAALRYIR 372
                ****99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-181183IPR009057Homeodomain-like
PROSITE profilePS5007115.4182084IPR001356Homeobox domain
SMARTSM003892.0E-152288IPR001356Homeobox domain
SuperFamilySSF466891.97E-162387IPR009057Homeodomain-like
CDDcd000861.27E-152585No hitNo description
PfamPF000466.8E-162683IPR001356Homeobox domain
CDDcd146865.09E-677116No hitNo description
PROSITE profilePS5084822.202157383IPR002913START domain
CDDcd088752.52E-65161375No hitNo description
SuperFamilySSF559617.55E-29166376No hitNo description
SMARTSM002347.6E-38166374IPR002913START domain
PfamPF018522.2E-43167372IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-16224369IPR023393START-like domain
PfamPF086702.1E-38700858IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MAMAMAHHRE SGDGGINGHL DSTGKYVRYT TEQVEALERV YAECPKPSSL RRQQLVRDCP  60
ILANIEPKQI KVWFQNRRCR EKQRKEASRL QSLNSKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQHLQ TANAPTATTT DAACDLVATT PQHSLRDASS PAGLLSIAEE ILAAFLSKAM  180
GTAVDWVQMP GMKPGPDSVG IFAISQSCSG VAARACGLVV LLQIAEILKD RPSWFRDCRS  240
LEVFTTFPTG DGGTIELVYT QVYAPTTLAP ARDFWTLRYT RTLENGNLVV CERSLSGSGT  300
GPNAASASQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EPGGVPEVVR PLYESSKAVA  360
QKMTIAALRY IRQIAQETSG EVVYSLGRQP AVLRTFSQRL SRGFNDAVNG FNDDGWSLIN  420
CDGAEDVTLA INSSKNLNTS YDPVNSLAFH GGILCAKASM LLQNVPPIAL IRFLREHRSE  480
WADFNVDAYS AASLKTGLYV YPGMRPTRFT GSQIIMPLGH TIEQEELLEV VRLESHPLAQ  540
EDAFMSRDVH LLQVCTGIDE NAVGACSELV FAPIDEMFPD DAVLLASGFR IIPLHSKTSD  600
PKDTWNSNRT LDLTSILEVG SSASQDAAAA ASTSNFRSVL TIAFQFPFGI NSQDDVAAMA  660
RQYVRSVISA VQRVAVAISP PSLSSSSEPK QTSACPEALT LVRWVCHSYR CHTGTELVPS  720
DSLDGDSVLK HLWNHQDAIL CCSLKSLPPV FMFANQAGLD MLETTLVALQ DITLDKIFGD  780
SVRKAFSDVF SSLMNQVTYY ILPFSSLSWM GFAYIPAGIC MSTMGRHASF EQAVAWKVLA  840
EDESTVHCLA FSFVNWSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462593.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1S3CHC50.0A0A1S3CHC5_CUCME; homeobox-leucine zipper protein REVOLUTA-like
STRINGXP_008462593.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]