PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002873
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 467aa    MW: 51572.9 Da    PI: 8.6471
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002873genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.1e-10180222345
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Cla002873 180 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 222
                56889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.9E-8178241IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415180224IPR004827Basic-leucine zipper domain
PfamPF001704.0E-7181222IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-7182225No hitNo description
CDDcd147081.98E-22182233No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7183226No hitNo description
PROSITE patternPS000360185200IPR004827Basic-leucine zipper domain
PfamPF141444.9E-30265339IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGSRTVKIGA DDLNKTVNGM PSFVSSMPTA NNSMGAEGSS IPSSRISDFR TLEQTLGFHI  60
EDVDLTRNPL YNQIKSSSST LNNIQFGSLI KPLASTDVNL PTAVMGSRTL PLQKESNPNL  120
VSTSGGPREN WGESNMADTS TRTDTSTDDT DDKSQRLDKD QGNSLAAYDS SNKSKEKTAD  180
QKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTQLEQ ELQRARQQGI FISNSGDQAH  240
SMSGNGALAF DVEYSRWLEE HNRLMNELRA AVNSHAGDTE LRTIVDNVTT QFDDIFRLKG  300
IAAKADVFHI LSGMWKTPAE RCFLWIGGFR SSEILKLLVN QLEPLAEQQL MGICNLQQLS  360
QQAEDALSQG MDALQQSLAE TLASATPATS GSSGNVANYM GQMAMAMGKL GTLEGFLRQA  420
DNLRQQTLQQ MHRILTTRQS ARALLAINDY FSRLRALSSL WLARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-141LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-141LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443255.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1S3B7K00.0A0A1S3B7K0_CUCME; transcription factor HBP-1b(C38)-like
STRINGXP_008443255.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-146bZIP family protein