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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla002778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GeBP | ||||||||
Protein Properties | Length: 200aa MW: 23573.9 Da PI: 9.6475 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 43.2 | 1.1e-13 | 28 | 113 | 7 | 97 |
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ws+ e+ l + li+f++k+ ++fy f+++ ++vsk q+++Ki++LK+ + +k+ + ++ + ++++ e+d++ifels+++Wg Cla002778 28 WSKGEEVNLVKKLIEFRTKKMG-----DEEFYPFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIFELSNRLWG 113 ****************888763.....479***********************************999**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.1E-11 | 28 | 113 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGEEKEGEKS SLGSEKKERR RKKSLFEWSK GEEVNLVKKL IEFRTKKMGD EEFYPFLRNG 60 SLAEVSKIQI FNKIQQLKNE YLEKKLELRK MRIKHLKYEN DDEIFELSNR LWGEVETTGS 120 TSTSKALDVC SRSYFEGFFD GHGLHVQLFT PSFLHSTNKD IHHLFSLQNH HFLIKANLKA 180 QLAQLKYHII QHPYNNPTNL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0A0KPQ5 | 5e-55 | A0A0A0KPQ5_CUCSA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31057 | 2 | 2 |