PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002749
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 580aa    MW: 63763 Da    PI: 5.0217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002749genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14346392455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdri +++  L+el+P +      K +Ka++L +A+eY+k Lq
  Cla002749 346 VHNLSERRRRDRIHEKMKALQELIPRC-----NKADKASMLDEAIEYLKTLQ 392
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-19340408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.18342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.86E-16345396No hitNo description
PfamPF000106.6E-12346392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-20346401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-16348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MNYCVPDFET DEDLSLPSSV HSRSKTSSMS DGEVMELLWQ NGEVVMQSQN QKSRMKLPPS  60
TTAEEITNRD TPPMNQEEEP QLFMQEDEMI SWLHYPLVDD STLENSFCEE LLYPSHPQSI  120
DQNAGFSAQV RTSDGMEFQP CTAMTTTATS TMAARPPIPP MRRTEPETKV SSFGLFSRHA  180
RRLESGQSNS KSKVGDSAVV GSTSSNTAVL TPESTGTELQ RTAVTDTASA DLACAVIGGG  240
GVAATSTGNG GELMKMIVGE TESVQRTTSL EDRKRKGKET DDSDYLCYST VALLCMVVPG  300
SICDSEILCF EWLLACFFCD VEFESTDAKK QVRGSTSTKR SRAAEVHNLS ERRRRDRIHE  360
KMKALQELIP RCNKADKASM LDEAIEYLKT LQLQVQMMSM GCGMMPMMFP GVQQFMPPMG  420
MGLGMGMGMG METGVNRPMV PYPNMLAGPM FPRQAGAAQL GPTFPFPPFH MAHVLNTDPS  480
RIQETNQSDQ MHNSSGMQNI NPPRASSSLD GYHQFLGTQR MRLPAASSQP SPQNQPPALL  540
PGTHNQHTSR RLENIENHES GSPTMDPCKL SSECFVSYGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651631.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_011651632.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A0A0LE090.0A0A0A0LE09_CUCSA; Uncharacterized protein
STRINGXP_008447345.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-60phytochrome interacting factor 3-like 5