PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla002257

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Trihelix

Protein Properties

Length: 285aa MW: 32328.7 Da PI: 10.0003

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla002257	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.6	5e-16	19	109	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt +++ +Li a e++ +l+rg+l+ ++W+ev++++ +er+ r+++qCk++++ l+++yk +k++ ++ + +p+f+ l+ Cla002257 19 CWTLDHTSTLIHAWGERHLDLNRGSLRHKHWQEVADAVnsshgHERKSVRTAIQCKNRIDTLKRKYKIEKARIEESGGSYVCAWPFFSCLD 109 7************************************99999999999******************998887677777999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-22	17	110	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MPLSHPSPSA STVPVREDCW TLDHTSTLIH AWGERHLDLN RGSLRHKHWQ EVADAVNSSH 60 GHERKSVRTA IQCKNRIDTL KRKYKIEKAR IEESGGSYVC AWPFFSCLDD LIGNSHKAST 120 SVGVSNSKSS PVTTPRLSLF SKVPVARRSG TKKRRSTHVY RSFCDSYLRR DVNSNEDGGK 180 DGLDSANSLS SPGFKDRDTG YRKLAEAIGT ITDIYERVEV AKQRHMVELE IQRMQFVKDL 240 EYQRMQLLME THLQIQKIKR ARRASGAGEA LASNSICHFL YLFLL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022969203.1	1e-171	trihelix transcription factor ASIL1-like
TrEMBL	A0A0A0K3T3	1e-150	A0A0A0K3T3_CUCSA; Uncharacterized protein
STRING	XP_004155517.1	1e-152	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	3e-59	sequence-specific DNA binding transcription factors