PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002237
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 220aa    MW: 24094.9 Da    PI: 9.4718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002237genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-202675255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++ a+++++g
  Cla002237 26 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDTAARQFRG 75
               69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-372689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-322683IPR001471AP2/ERF domain
PROSITE profilePS5103223.7492683IPR001471AP2/ERF domain
CDDcd000184.50E-312683No hitNo description
PfamPF008472.1E-132675IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-222684IPR016177DNA-binding domain
PRINTSPR003674.3E-112738IPR001471AP2/ERF domain
PRINTSPR003674.3E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVSKEKSTAK NLPSLSNNNN NGKELHFRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDTAA RQFRGAKAKT NFPLPEDSID VSPQKINHSP SPSSTVDSSS SSTQEKTPSP  120
EILRSYGVGP TFPFIQPQFL HQVACNGGGG VRPVLFMDAF GRPEFVAHGY PIRFDPTTVD  180
LTARFAGRIQ SDSDSSSFVD CRPAKEILNL DLNLAPPVDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-222388268ATERF1
3gcc_A5e-222388268ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455284.21e-117PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 4
TrEMBLA0A1S3C1T31e-116A0A1S3C1T3_CUCME; LOW QUALITY PROTEIN: ethylene-responsive transcription factor 4
STRINGXP_008455284.11e-116(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-32erf domain protein 9