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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cla001961 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family |
Trihelix |
Protein Properties |
Length: 545aa MW: 61805.7 Da PI: 5.7195 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cla001961 | genome | ICuGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 87.1 | 2.1e-27 | 58 | 143 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW++qe+laL+++r++m+ +r++ k+plW+evs+k+ e gf+r+pk+Ckek+en+ k++k++k+ +++++++s++ +++ d+le
Cla001961 58 RWPRQETLALLKIRSDMDAIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELE 143
8*********************************************************************9999999999999987 PP
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2 | trihelix | 105.7 | 3.2e-33 | 379 | 464 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev aLi++r+eme +++++ k+ lWee+s++mr g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpyf+ql+a
Cla001961 379 RWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKR-AEDSKTCPYFHQLDA 464
8*********************************************************************8.89999********85 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 545 aa
Download sequence Send
to blast |
MDVDSGEAVV TEAGEAHEVG NGDGRGGGGG NGSNSGEEDK GSSLLLFEDG EKNFGGNRWP 60 RQETLALLKI RSDMDAIFRD ATHKAPLWDE VSRKLGELGF NRTPKKCKEK FENVYKYHKR 120 TKDVRSGKSD NSKKVYRFSD ELEAFDHHNS HHQNHILFQS HHHQPPQPPP PLPPVPPTTT 180 TTPPPVMKTV NSTVSSTMNT TTNNNSLPPK SSNNPLSNLP NMAANVMFSS STSSSTASEE 240 DPFRSSRRRR KKRKWSDFFL RLTKEVIEKQ EGLQLKFLEA LERIENQRKL RDEAWRMKEM 300 KRVNQEHEVL VQEMSMAAAK DAAVVAFLQK IAPFSAPPPP PPPPPMTTQS QNNENNGKMT 360 SVIPMTNGKV SSIGGSPSRW PKGEVEALIR LRTEMEMKYQ ENGPKGLLWE EISAAMRGLG 420 YNRSSKRCKE KWENINKYFK KVKDSNKKRA EDSKTCPYFH QLDALYREKE KNMNNFDINS 480 QMEPLMVEPE QQWPPPFQAN NQIMGSLQRI NDEGNQEEDD DEEEEEEEEE EEEEDGGSSS 540 TDVED
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 247 | 252 | RRRKKR |
2 | 247 | 253 | RRRKKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |