PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla001713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27514.3 Da PI: 6.7978 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 7.9e-11 | 79 | 126 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ +++L Cla001713 79 SKACREKLRRDRLNDKFLELGSILDPG---RPPKTDKAAILVDAVRMVNQL 126 6789**********************8...89***************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.287 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.22E-13 | 75 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 79 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-13 | 79 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.9E-9 | 81 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.36E-8 | 83 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVSPENPNWL FDYGLIDDIP VPDANFPVTS SSFSWAIQPF NGIHDTGVEI EGSLADLDDR 60 LESGSKKRVR SDSCSASSSK ACREKLRRDR LNDKFLELGS ILDPGRPPKT DKAAILVDAV 120 RMVNQLRSET QKLKESNSSL QEKIKELKAS LIGFLSQLYY AEKNELRDEK QRLKADKERL 180 EQQVKSMPAQ QPGFLPPPIP TFAAQGQAPG NKLVPFIGYH PSVAMWQFMP PAAVDTSQDH 240 VLRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681826 | 1e-112 | LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032. | |||
GenBank | LN713258 | 1e-112 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008454561.1 | 1e-151 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 2e-97 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1S3BYW4 | 1e-150 | A0A1S3BYW4_CUCME; transcription factor ILR3-like | ||||
STRING | XP_008454561.1 | 1e-151 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-93 | bHLH family protein |