PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla001702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29165.4 Da PI: 8.5949 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1.1e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++v ++G g+W+t + + g+ R +k+c++rw +yl Cla001702 16 KGLWSPEEDQRLRNYVLKYGHGCWSTLPLKAGLERNGKSCRLRWINYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.8e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+ ++ ++++lG++ W+ Ia++++ gRt++++k+ w++yl Cla001702 69 RGTFSQEEQHTILSLHHMLGNK-WSQIAQHLP-GRTDNEVKNLWHSYL 114 899*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 10 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.954 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-9 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.824 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.10E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGCETASHRT KPKHRKGLWS PEEDQRLRNY VLKYGHGCWS TLPLKAGLER NGKSCRLRWI 60 NYLRPGLKRG TFSQEEQHTI LSLHHMLGNK WSQIAQHLPG RTDNEVKNLW HSYLKKKLGK 120 QQQKQPSSTY STTNSTTSDS ADSSTTNQSM DSPKPNNSLP KLFFAEWLAP NHHTADGWSS 180 GGPEFGSSLS LHQSVVGNNN CSGVDFEFGT SLGSEHQNNG IMDCQVKFEN HNSIDFANYT 240 SAGDVCVEQL LHFGNGFMNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 12 | 118 | 3 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 5e-32 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 5e-32 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148377.1 | 1e-107 | PREDICTED: transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 3e-59 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A0A0LEM1 | 1e-106 | A0A0A0LEM1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165764.1 | 1e-107 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3830 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 2e-56 | myb domain protein 45 |
Publications ? help Back to Top | |||
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