PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001663
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 343aa    MW: 38093.4 Da    PI: 5.2796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001663genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-0761110154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r++ +  rE+ RR r+N+ f eL  +l ++     +K++Ka iL  +++ +k+L
  Cla001663  61 RKVQKADREKLRRGRLNEQFVELGNILDPD----RPKNDKARILMDTIQLLKDL 110
                5677889********************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-1259124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.01760110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1060132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-561114No hitNo description
PfamPF000101.2E-561110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-466116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDQLIQRDDL VQNPATPSTS IVPCIELPGH PIRSQSNSKS VQVSAISIWF DGEFKDSAAA  60
RKVQKADREK LRRGRLNEQF VELGNILDPD RPKNDKARIL MDTIQLLKDL TSQVNKLKTE  120
HANLIEESHE LAQEKSDLRE EKPLLTSDIE NLNAQYQQKL RATYPWAVMD HSVVMAPAPF  180
PFPVPMQMPP GPFPLHPSLQ PYTFFGNPDP RVIANPCSTF VPYIPPNSLT EQQSPQNAPP  240
FIQSGNRSDN FSEQNSRSKF SVESKIEKSV DSNEVATYLE LKTPGSSSDQ DSSFECSNGK  300
NRKENNLSEE SSSSRCSSSC SLGDNSSSST PNGRKSTDIC GNP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457648.11e-175PREDICTED: transcription factor bHLH121 isoform X1
SwissprotQ9LT232e-88BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1S3C6M91e-174A0A1S3C6M9_CUCME; transcription factor bHLH121 isoform X1
STRINGXP_008457648.11e-174(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-79bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]