PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla001653

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 234aa MW: 26036.6 Da PI: 9.1846

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla001653	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2e-12	82	134	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs + Lr llP+ + p k++s ++ +A +YI + q Cla001653 82 KKLKHNASERDRRRKINSLYYSLRCLLPPtN---PMKRMSNPSTISRALKYIPEVQ 134 5789***********************66...99**************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.897	81	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-12	82	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-15	82	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-10	82	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.51E-12	82	138	No hit	No description
SMART	SM00353	1.7E-8	87	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLAIVPSSFT TQGEWLSQNA LISNQWTAGG SGGISESFIQ FSSPLSSQQV RLESCSPPSA 60 GNGGRRGAEG MGDGNDLTAV AKKLKHNASE RDRRRKINSL YYSLRCLLPP TNPMKRMSNP 120 STISRALKYI PEVQQQVEGL RRRKQDLVTK INATTYEEKQ IRKNPKEAWM SSLCDVNWLS 180 ETEALLQIAS EETLKPHPFS QILLSLEEDG LLLLSASSFQ SFDGRLFFTL LLQV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144366.2	2e-87	PREDICTED: transcription factor bHLH101-like
TrEMBL	A0A1S3C1M0	3e-85	A0A1S3C1M0_CUCME; transcription factor bHLH101-like
STRING	XP_008455701.1	5e-86	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-27	bHLH family protein