PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001444
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 159aa    MW: 18092.3 Da    PI: 4.4644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001444genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-0716392347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+ Ia +++ gRt++++k++w+ +
        Cla001444 16 QWSIIAGRLP-GRTANDIKNYWNCH 39
                     6*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.704144IPR017930Myb domain
SuperFamilySSF466892.53E-71545IPR009057Homeodomain-like
CDDcd001673.46E-51640No hitNo description
Gene3DG3DSA:1.10.10.608.8E-101640IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSLSMIDSSP YRFCYQWSII AGRLPGRTAN DIKNYWNCHL SKKVSGQGVE KPNSTKEGAI  60
FGKPPKWKPL QEESSKSKGK EYVDDQNGEI SQGILVQNQN LNLPFVVEQN NSMSLGNMAM  120
DFQFDQQAVV KAMEDEDGYN KGEVWDDWIS EMDLWIDSL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818461e-110LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBankLN7132591e-110LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441809.18e-76PREDICTED: transcription factor MYB90-like
TrEMBLA0A1S3B4A42e-74A0A1S3B4A4_CUCME; transcription factor MYB90-like
STRINGXP_008441809.13e-75(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.12e-12myb domain protein 114