PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001224
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family BES1
Protein Properties Length: 699aa    MW: 78352.2 Da    PI: 6.1864
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001224genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822142.34.3e-44732101131
     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasaspessl 94 
                gg++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL++eAGwvv +DGtt++   +g kp    ++a +  ss+ as+++++
  Cla001224  73 GGGRRCRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALATEAGWVVLPDGTTFPsrsQGIKPAgggSTAVTSSSSHMASQQTPS 172
                68999****************************************************************9888999999865555566666668888887 PP

     DUF822  95 q.sslkssalaspvesysaspksssfpspssldsisla 131
                +  + +s+ ++s  e  ++++k +  p +  +d  ++a
  Cla001224 173 TsIRGVSCGFRSLPEYNACRMKGVFLPNSPPYDASPNA 210
                768899*********************99999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-3874197IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.36E-178255691IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.5E-194258692IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.2E-101264683IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-68295309IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-68316334IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-68338359IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060342350IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008422.5E-5421430IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.8E-68431453IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-68504523IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-68538554IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-68555566IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-68573596IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.5E-5576586IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.8E-68613635IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.5E-5664678IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008422.5E-5679693IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MATDMQRLIG TSEEDDDEDV EMDVKEEDDE EDDGVRRVRS SLMVGDDGGM VSSGSNNNRF  60
EQHQVQEQVG TPGGGRRCRP LEEKERTKLR ERHRRAITAR ILAGLRRHGN YNLRVRADIN  120
DVIAALATEA GWVVLPDGTT FPSRSQGIKP AGGGSTAVTS SSSHMASQQT PSTSIRGVSC  180
GFRSLPEYNA CRMKGVFLPN SPPYDASPNA RCQSSSLVGD AGEQPGGHPL ISSSVDAVDG  240
MQIVDATPKL TERDFSGSAY IPVYVMLPLG VINMKCELVD PDGLLKQLRL LKSVNVDGVM  300
VDCWWGIVEA HSPQEYNWNG YRRLFQMVHE LKLKLQVVLS FHECGGNVGD DVCIPLPHWV  360
AEIGRSNPDI FFTDREGRRN PECLSWGVDK ERVLRGRTGL EVYFDYMRSF RVEFNDFFED  420
GVITTIEIGL GPCGELRFPS CPVKHGWRYP GIGEFQCYDQ YLLKNLRKAA EARGHSFWAR  480
GPDNAGSYSS RPHETGFFCD GGDYDGYYGR FFLNWYSKVL VDHGDRVLYL AKLAFEGTRI  540
VAKLSGIHWW YKTASHAAEL TAGFYNPCNR DGYAAIMAML KKHSASLNFT TAEFHMLHQR  600
EDFANSLSDP EAVVWQVTNA AWDVGVEVLS ENPLPFLDRV GYNKILDNAK PLADPDGRYL  660
SSFIYHRLGP LLLERQNLME FERFVKRMHG KALGRYFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-14826069011443BETA-AMYLASE
1byb_A1e-14826069011443BETA-AMYLASE
1byc_A1e-14826069011443BETA-AMYLASE
1byd_A1e-14826069011443BETA-AMYLASE
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458240.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_008458241.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_008458242.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_008458243.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_016902303.10.0PREDICTED: beta-amylase 7-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1S4E2520.0A0A1S4E252_CUCME; Beta-amylase
STRINGXP_008458240.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]