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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla000688 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | CAMTA | ||||||||
Protein Properties | Length: 115aa MW: 13806.5 Da PI: 9.675 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 161 | 2.3e-50 | 13 | 115 | 3 | 104 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e ++rwlk+ e+ iL+n+e+++lt+e++++p+sgsl+L+n++++r+frkDG+sw+kk+dg+tv E+he+LKvg+ e+l+cyYah+e+np+fqrr+yw+ Cla000688 13 REaQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWM 112 55599*********************************************************************************************** PP CG-1 102 Lee 104 L++ Cla000688 113 LDQ 115 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 66.95 | 8 | 115 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.0E-57 | 11 | 115 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.8E-43 | 14 | 115 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MMNAGYDIND LYREAQTRWL KPPEVFFILQ NHENYQLTEE APKQPTSGSL FLFNKRVLRF 60 FRKDGHSWRK KRDGRTVGEA HERLKVGNAE ALNCYYAHGE HNPNFQRRSY WMLDQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 2e-54 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 2e-54 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140640.1 | 5e-75 | PREDICTED: calmodulin-binding transcription activator 4 | ||||
Swissprot | Q9FYG2 | 4e-57 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A0A0KCA8 | 1e-73 | A0A0A0KCA8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140640.1 | 2e-74 | (Cucumis sativus) | ||||
STRING | XP_004166127.1 | 2e-74 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14241 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-59 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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