PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cla000604

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 264aa MW: 29211.2 Da PI: 8.4144

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000604	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	35	91	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprCdstntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk kk + Cla000604 35 LKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKKLK 91 79***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	35	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MKASLEEEIR QKSSSSGRTK QNNNGDHCEQ ELGGLKCPRC DSTNTKFCYY NNYSLTQPRH 60 FCKTCRRYWT KGGALRNVPI GGGCRKTKKL KSSSSSSSSV TTAAPLPDHS SLAFKFFAGI 120 SPPPPPPSVD FGAIGGEGSC LHLASSIESL SSLNQDLHWK LQQQRLAMIF GDQEQQQQSQ 180 NKDNQNHNFI QPILFHNLHH QKSAAPSTTT TTISDQWFFP NQVTATNNIA SRSVDDGSGW 240 NSNNNDNHGG IQAWEDLHHF TAFP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681857	1e-72	LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBank	LN713260	1e-72	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008450228.1	1e-101	PREDICTED: dof zinc finger protein DOF5.7
Swissprot	Q9LSL6	1e-33	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A1S3BNR3	2e-99	A0A1S3BNR3_CUCME; dof zinc finger protein DOF5.7
STRING	XP_008450228.1	1e-100	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	3e-34	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]