PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla000545

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 196aa MW: 21279 Da PI: 6.0892

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000545	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.5e-42	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+ Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+a+la++++e Cla000545 35 PCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAE 134 7***********************************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.143	34	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	35	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MEGSDSIATV SSTPLSQSPS SSSSPAPPPP VVLSPCAACK ILRRRCAERC VLAPYFPPTE 60 PAKFAIAHRV FGASNIIKFL QELPESQRAD AVSSLVYEAS ARIRDPVYGS AGAICQLQKQ 120 VNELQAQLAK AQAEVVNMQC QQANLVAFVC RELAQSHHQS FDDFNGSPHN GLLFQSISPS 180 YFDDSNVNSL WEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	26	142	2	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	26	142	2	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681922	1e-126	LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBank	LN713265	1e-126	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463908.1	1e-112	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-73	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S3CKA7	1e-111	A0A1S3CKA7_CUCME; LOB domain-containing protein 1-like
STRING	XP_008463908.1	1e-112	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	9e-64	LOB domain-containing protein 1