PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033853m
Common NameCICLE_v10033853mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 411aa    MW: 44792.6 Da    PI: 5.5815
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033853mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.2e-17274328256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Ciclev10033853m 274 RKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 328
                      778899***********************************************98 PP
2HD-ZIP_I/II123.97.4e-40274364192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Ciclev10033853m 274 RKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 364
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-18268331IPR009057Homeodomain-like
PROSITE profilePS5007116.957270330IPR001356Homeobox domain
SMARTSM003892.4E-15272334IPR001356Homeobox domain
PfamPF000467.9E-15274328IPR001356Homeobox domain
CDDcd000864.59E-16274331No hitNo description
Gene3DG3DSA:1.10.10.609.5E-17274328IPR009057Homeodomain-like
PROSITE patternPS000270305328IPR017970Homeobox, conserved site
PfamPF021839.3E-11330364IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.8E-23330376IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MELGLSLGDA AGSSKPFEWM EKSHTLAHTR TSRSNKGIGF CMELSIGPTS SVREDGDDDN  60
RKPTQEDEDH HHHEDEQTET AAAAAARLVD SAEIRRCSTP TPTAETANII QQLDLLPNTP  120
VVLPLPRNPT PSSILASFPA ANWTSAGSSE AAGSGQMARD ANKLPMAIPA PLDLLVPHHN  180
DDEDPSSPEA EDGDGSHGAG ALSSSSLNTT SSAQMDFCIH SSNHHHNDTS TTGTGGTNNI  240
RKSCGDIFRA SNDNNNEVVD GCSELEDENG CSTRKKLRLS KQQSAFLEES FKEHTTLTPK  300
QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN RRLQKELQEL  360
RALKSTAGNN PFYMQLPATT LTMCPSCERV ATTNINPPPL PTTTTTPPKA T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278TRKKLRL
2322330RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439024.20.0homeobox-leucine zipper protein HOX11
RefseqXP_006482812.10.0homeobox-leucine zipper protein HOX11-like
TrEMBLV4VI280.0V4VI28_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006439024.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3346022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-64homeobox from Arabidopsis thaliana