![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10033847m | ||||||||
Common Name | CICLE_v10033847mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 30837.1 Da PI: 4.7632 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+++taeeAa+a+++a+ l+g Ciclev10033847m 17 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 66 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.04E-31 | 16 | 73 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-19 | 17 | 74 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-27 | 17 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-35 | 17 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.533 | 17 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-14 | 17 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-8 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-8 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MEEAALSLCG GRRGRKRFVG VRQRPSGRWV AEIKDTIQKI RVWLGTYDTA EEAARAYDEA 60 ACLLRGANTR TNFWPCSLSS STRPPALPSR ITNLLLHRLK ARNSRNDQPT ATSIAMTQDQ 120 EAANNLLEDT GQSADNYFNV AQESNRITSN DYCVIDGFDS SFNSSTSTSV HTSTTGDNNW 180 STNNIGYDEN EGTNCKKEKI DSRFVDALGA ASACTYEYSP FEIAQEMMGS MEKEDGSSSS 240 EDEGDPTMQL IRETMKRMKY ERNSQLLCML SMESLSV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438759.1 | 0.0 | ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | V4VHD5 | 0.0 | V4VHD5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006438759.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19615 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-13 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10033847m |
Entrez Gene | 18044217 |