PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033813m
Common NameCICLE_v10033813mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 601aa    MW: 67158.5 Da    PI: 10.4646
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033813mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.8e-101160143
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksr 43
                     ++ W t+E++ l++avk++G ++W++++ +++       +  t+  ck +
  Ciclev10033813m 11 KKTWGTWEELVLACAVKRHGFKNWDSVSVELQtktslphLLTTPQCCKQK 60
                     678*****************************655555544455555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.063665IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-4663IPR009057Homeodomain-like
SuperFamilySSF466898.16E-5946IPR009057Homeodomain-like
SMARTSM007171.2E-41067IPR001005SANT/Myb domain
PfamPF002491.7E-81151IPR001005SANT/Myb domain
CDDcd001679.81E-51364No hitNo description
SMARTSM002976.1E-18244355IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.7E-16249358IPR001487Bromodomain
SuperFamilySSF473707.98E-16252355IPR001487Bromodomain
CDDcd043693.49E-17255350No hitNo description
PROSITE profilePS5001412.25265336IPR001487Bromodomain
PfamPF004394.1E-10266340IPR001487Bromodomain
PROSITE patternPS006330270328IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAMSSDGEQR KKTWGTWEEL VLACAVKRHG FKNWDSVSVE LQTKTSLPHL LTTPQCCKQK  60
YRDLERRFND DPQPHNNNNH NVHVPWLEHL RKVRVDELKR ELQRCDLSIL SLQLQVKKLE  120
EEREKPDLEI EKTRSLNDND KTDDPQKSER RPVKEVFNNR FLVSPAEEES NRSVNESNST  180
GFNPKHLLPK SEPEPAGGQS PVLSRSKGEL GDSVTPLSSD VQSSASFGIG TERKRGSAAA  240
GGHIIEGTYA ESEPLIRLLD LIRTHNHHLS SLFERRLKSQ ESNEYKELVR QHVDLETIQT  300
RVERGSYSAC ILTFYRDLLL LFNNAIVYFP KASLESEAAH QLRNLVSNEI RKETHKSDSS  360
QEEAPPLPTP PPQTKPLLER SDSLLAKQKA SAPIIVCRKR SSVSAKPSSS FAQKGDNQKQ  420
PSDGAKKPAT DVKQPSPVEQ SLLKVKTEEK PVTTGARSSR RSSRNLTSKT PPAPSTGNKK  480
QKTAAQGSKG GSGSVNKRET PKTDNKKKAE TSDKKKSVVD FLKRIKKNSP VHTVKRSKGG  540
EEQKKTNNSS GKKERILLRS SDKKQAKEES SSPSKKSVGR PPRKMPEASG KRGRDTGGKE  600
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439033.20.0uncharacterized protein LOC18045544
TrEMBLV4SWJ30.0V4SWJ3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006439033.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-93DNA-binding bromodomain-containing protein