PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033790m
Common NameCICLE_v10033790mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 189aa    MW: 21524.6 Da    PI: 10.0978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033790mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1133.2e-35421611128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp G+rF+P+ +el+++yL kk++g++l++ ++i+e+d+y ++P++Lp +++k ++  e yfF++  k        +r t+sgyWk tg+d ++
  Ciclev10033790m  42 LPLGYRFSPRGNELITHYLIKKISGQQLPA-NIIREIDLYAFDPHQLPiSEFKYGKPdEAYFFTRPGK--------RRRTSSGYWKPTGRDLPI 126
                      699***************************.89***************756555444499***99865........566899************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ls +++ vg k++L+fy+g+ap+g kt Wv+he+r+
  Ciclev10033790m 127 LS-GKAIVGFKRILIFYEGKAPRGIKTPWVVHEFRV 161
                      **.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3938163IPR003441NAC domain
PROSITE profilePS5100538.24942188IPR003441NAC domain
PfamPF023657.9E-1843161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MALLDIVSYS QQTSGATSNN NLLAYSISGG RGSNQDDEEY NLPLGYRFSP RGNELITHYL  60
IKKISGQQLP ANIIREIDLY AFDPHQLPIS EFKYGKPDEA YFFTRPGKRR RTSSGYWKPT  120
GRDLPILSGK AIVGFKRILI FYEGKAPRGI KTPWVVHEFR VNPLYFSAIR RNKLDEDVNA  180
KVTRVYMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-34291612140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437965.21e-134NAC domain-containing protein 2
TrEMBLV4THX81e-136V4THX8_9ROSI; Uncharacterized protein
STRINGXP_006437965.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39610.12e-33NAC domain containing protein 6