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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10033728m | ||||||||
Common Name | CICLE_v10033728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 18937.6 Da PI: 7.4414 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.1 | 9.9e-18 | 27 | 74 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie+ s r v fskR++g++ KA EL LCda++av+i s++g+l+ + Ciclev10033728m 27 KIEDASSRIVAFSKRKKGLFNKAGELHRLCDANIAVVIQSPSGRLFSF 74 69*******************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-23 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.689 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-24 | 19 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-17 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-19 | 27 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-17 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-17 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MAMEMTNANS NKKKPCGKGR RKVEIRKIED ASSRIVAFSK RKKGLFNKAG ELHRLCDANI 60 AVVIQSPSGR LFSFGKPSAD HVIDKFLRDA GYNHQSKEET EDMEESTELG GGGGGGVEYW 120 WEESTEGLSL EELKKYMDSL EALRNNVAIK LEEMMMRRAC ERDLLSFI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 26 | KKPCGKGRRKVEIRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436064.1 | 1e-121 | agamous-like MADS-box protein AGL29 | ||||
Refseq | XP_006486495.1 | 1e-121 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2H5NYU2 | 1e-120 | A0A2H5NYU2_CITUN; Uncharacterized protein | ||||
TrEMBL | V4VAM8 | 1e-120 | V4VAM8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006486495.1 | 1e-121 | (Citrus sinensis) | ||||
STRING | XP_006436064.1 | 1e-121 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-21 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10033728m |
Entrez Gene | 18045516 |