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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10033714m |
| Common Name | CICLE_v10033714mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
YABBY |
| Protein Properties |
Length: 160aa MW: 18079.6 Da PI: 6.7725 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10033714m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 195.4 | 2.6e-60 | 6 | 160 | 2 | 159 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91
++f+ +eq+CyvqC+fC+til+vsvP +s+++vvtvrCGhCtsllsvn++kas +lla+ sh +e +ee ++ee + +++ ++ s
Ciclev10033714m 6 HLFDLPEQICYVQCGFCTTILLVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASfvplHLLASFSH-----DDEPKEEFRKEEVQADQKAFNRFS 94
7899**********************************************999777788888888.....344455555555556666666666 PP
YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
+s +ss + +e++ + + v++PPe+rqr+Psaynrfikeei+r+k++nP+++h+eafs+aakn
Ciclev10033714m 95 PSILTSSDNEEEDTGSVIN--HVVNKPPERRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKN 160
7777777553444444444..4699******************************************9 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 160 aa
Download sequence Send
to blast |
MSALNHLFDL PEQICYVQCG FCTTILLVSV PCSSMSMVVT VRCGHCTSLL SVNMMKASFV 60
PLHLLASFSH DDEPKEEFRK EEVQADQKAF NRFSPSILTS SDNEEEDTGS VINHVVNKPP 120
ERRQRAPSAY NRFIKEEIRR LKTENPNMAH KEAFSTAAKN
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Publications
? help Back to Top |
- Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Simon MK,Skinner DJ,Gallagher TL,Gasser CS
Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
Genetics, 2017. 207(4): p. 1489-1500
[PMID:28971961]
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