PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Ciclev10033711m

Common Name

CICLE_v10033711mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 275aa MW: 31388.1 Da PI: 5.0366

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10033711m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.2	1.1e-07	49	122	3	80
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 Y++ +k +GF++ k++s+k +++e + t Cs +gk+++ ++ r +++t+t+Ck k++ + d kwev++ Ciclev10033711m 49 YKKNGKFMGFEIIKRTSSKG-DDEELKYVTSSCSPSGKPKSLLNH---PFRLQPTTKTNCKVKVRATTCLDRKWEVMS 122 8899999******99998.8888**********998777...8999*********************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MILISWIFLL YLNQVDDKND TSNDPKVEEI IKPKIGMVCY TNLDLFESYK KNGKFMGFEI 60 IKRTSSKGDD EELKYVTSSC SPSGKPKSLL NHPFRLQPTT KTNCKVKVRA TTCLDRKWEV 120 MSRYGKITCQ PANLPKSTCK TPSTVGNFVG YNGFGISNLN SLRVVSEFGI EKKYVKYQPQ 180 SSRQKALHRL VVFSAAATTR RHQLFLFSLN FTNTATTHDH EELEEGEYEE DEVELDEDEE 240 EENGSVHDDG EGEREADTEN YESENDLQHR ELQV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	V4VDA2	0.0	V4VDA2_9ROSI; Uncharacterized protein
STRING	XP_006437124.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17343	3	10

Link Out ? help Back to Top
Phytozome	Ciclev10033711m
Entrez Gene	18044818