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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10033544m | ||||||||
Common Name | CICLE_v10033544mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 485aa MW: 54117.3 Da PI: 9.6837 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.9 | 2.3e-10 | 333 | 370 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +e+ ++yp+ ++++ LAk++gL+++qV++WF N R + Ciclev10033544m 333 YENflHPYPTDSDKQILAKQTGLSKNQVSNWFINARVR 370 554559******************************88 PP | |||||||
2 | BELL | 94.6 | 9e-31 | 205 | 275 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e k +kL+ +leeV+ +Yk y++q+q v++sFe+vaglg+a+pY+s+A kaiS+hF cLk+ai +qi Ciclev10033544m 205 RIERSWKTSKLVLMLEEVYWKYKLYCQQMQSVVASFETVAGLGHAAPYISFAFKAISKHFCCLKNAILDQI 275 678889***************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00854 | 3.7E-10 | 49 | 139 | IPR000109 | Proton-dependent oligopeptide transporter family |
SMART | SM00574 | 1.5E-33 | 152 | 273 | IPR006563 | POX domain |
Pfam | PF07526 | 2.2E-31 | 157 | 271 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.762 | 311 | 374 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.76E-13 | 314 | 375 | No hit | No description |
SMART | SM00389 | 1.5E-11 | 314 | 378 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-17 | 315 | 381 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-26 | 317 | 378 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.1E-18 | 331 | 370 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005215 | Molecular Function | transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MRWGIASLIL STTMAVSIAA FYIRKTCYRF RVPEGCPLTP LFHVAVVLVL NTIPIWVTSL 60 TFRISVAQAS TSSVKQGATM NRKVGNNFRI PPASIYSLGA VANLVLIIFY DKRIGIGMGF 120 SVLAMTVAAF VESKGLKIKS EVRSSVPWGP FTGYASILKR SRFLKPAQRI LDEFCGTLYF 180 DSSGSQVDSF CENPVVRDFI AFSDRIERSW KTSKLVLMLE EVYWKYKLYC QQMQSVVASF 240 ETVAGLGHAA PYISFAFKAI SKHFCCLKNA ILDQIHVSGS KTVSDKNANN DTTEPGCSSH 300 KPVQKLGFLR PPHWRSQRAL PDHAVAVLKT WLYENFLHPY PTDSDKQILA KQTGLSKNQV 360 SNWFINARVR LWKPMVEEVH MLEIGQTQTT AEATNSNFGV PSDHLNTLFP EKLYQATQIL 420 QAEHVPTKHC RNKRAQAPEQ NEEQKNACLS NLPSDQHIGF SGSSGVTLAL ALNQNDGNDL 480 SRPFP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006486540.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | V4V9G6 | 0.0 | V4V9G6_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006435589.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17615 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 2e-77 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10033544m |
Entrez Gene | 18044714 |