PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033526m
Common NameCICLE_v10033526mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 340aa    MW: 38925.4 Da    PI: 4.7323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033526mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.21.3e-2681411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                      lp Gf+F+P+deel+ +yLkkkv+g  ++l+e  i+++++y+ +P+++       + + ++++yfF++ +kk+++g+r  r++    g+W+   
  Ciclev10033526m   8 LPHGFQFRPSDEELIEHYLKKKVSGIFIPLAEYfIRDCNLYEEKPSEIWDshggPFLNADEDLYFFTQLKKKSSKGSRIDRKVGssGGTWQGED 101
                      699************************9998888**************632455333478899******************75544899***** PP

              NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++s  ++ ++g kk + + k  +    +  W+mhey+l
  Ciclev10033526m 102 AGKDIVSGeSKIKIGSKKRFRYEK--QGCEDHGAWIMHEYTL 141
                      *****99745667********984..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-305158IPR003441NAC domain
PROSITE profilePS5100533.4068159IPR003441NAC domain
PfamPF023651.9E-199141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LIEHYLKKKV SGIFIPLAEY FIRDCNLYEE KPSEIWDSHG  60
GPFLNADEDL YFFTQLKKKS SKGSRIDRKV GSSGGTWQGE DAGKDIVSGE SKIKIGSKKR  120
FRYEKQGCED HGAWIMHEYT LHLPKNQATN YVLYRLRKNQ PSGHDIMKYG SAKKRKLKDF  180
QDNSNQSEQV ADIEMDRLFT SQQNQQQNYM DYQEVSCSSS DMMSEQSLAG GMGLASSVYE  240
PSMEMMMSHF DQMICNQQYD SGNNVLQDRE TGENYHCHSE SIVEVPMAVP KSLVQHEDSD  300
GLPELIEEDY SFLEDLLQEP IGDVRGSFGL MLDLDDLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-14814115140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437303.10.0NAC domain-containing protein 83
TrEMBLV4SRT40.0V4SRT4_9ROSI; Uncharacterized protein
STRINGXP_006437303.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.13e-16NAC domain containing protein 45