PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10033491m

Common Name

CICLE_v10033491mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 322aa MW: 36763.1 Da PI: 8.6011

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10033491m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.3	7.4e-22	40	131	1	83
trihelix 1 rWtkqevlaLiearremeerlr...rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rWt+qe+ +Li+++r +e+r+r + + + +p+W++v+ ++++ g++r p+qC+++w nl +++kik++e++ ++e++s +++ + Ciclev10033491m 40 RWTRQETIVLIQGKRVVEDRIRgfrT-StsafrpdQSEPKWDSVATYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRN 131 8*****************995531.14556666********************************************999998888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	33	106	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.0E-5	38	108	IPR009057	Homeodomain-like
Pfam	PF13837	1.2E-11	39	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-4	40	106	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MAPGSNDKHE DGSSLPNGYN EEQAIGGNTD DRSKTARHPR WTRQETIVLI QGKRVVEDRI 60 RGFRTSTSAF RPDQSEPKWD SVATYCKQYG VNRRPVQCRK RWGNLLVDFR KIKRWESQMK 120 EEKQSFWVMR NESRKQMKLP GYFDREVYDV LDGVLAMPAV PLTTMSVSEE DEDDEVFDSD 180 RSTAAGDGLF SDSEPSQRQE IGHNPEKETT ERQGPRKKVA AQLHVADTLK EKLAGTTTAN 240 GSTTQERWKR RRLSSCVSKE TNMGDLLFKV LERNNSMLNT QLEAQNINCQ LDREQKKEHS 300 DNLIAAINKL TDALLRIANK L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	252	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436955.1	0.0	trihelix transcription factor ASR3
TrEMBL	V4TF54	0.0	V4TF54_9ROSI; Uncharacterized protein
STRING	XP_006436955.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-86	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Ciclev10033491m
Entrez Gene	18044346