PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10033460m

Common Name

CICLE_v10033460mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 84aa MW: 9882.02 Da PI: 4.5671

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10033460m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.7e-08	8	56	3	48
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 W+ eE + + ++v+++ ++ W +I + ++ ++t ++k ++ k++ Ciclev10033460m 8 QWSWEENKAFENGVALYYKEgqdeEWVKIHSLVP-TKTIDEIKVHFKKLM 56 7***************99**********.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.9E-4	5	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-4	7	56	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.72E-9	7	62	IPR009057	Homeodomain-like
Pfam	PF00249	5.7E-6	8	55	IPR001005	SANT/Myb domain
CDD	cd00167	5.79E-4	9	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MSGSNQKQWS WEENKAFENG VALYYKEGQD EEWVKIHSLV PTKTIDEIKV HFKKLMEDLE 60 LIEFGFEPVS IDYHQQYKNE DGK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019189782.1	2e-14	PREDICTED: transcription factor DIVARICATA
TrEMBL	A0A2H5PQ56	6e-54	A0A2H5PQ56_CITUN; Uncharacterized protein
TrEMBL	V4VBS6	6e-54	V4VBS6_9ROSI; Uncharacterized protein
STRING	XP_006436529.1	1e-54	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25770	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	2e-14	MYB family protein

Link Out ? help Back to Top
Phytozome	Ciclev10033460m
Entrez Gene	18043636