PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033398m
Common NameCICLE_v10033398mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 266aa    MW: 29859.1 Da    PI: 9.0591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033398mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09145192455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i  ++  L++l+P +     k   Ka iL + ++Y++ Lq
  Ciclev10033398m 145 SHSLAERVRRAKISARMKLLQSLVPGC----EKITGKALILDEIIKYVRTLQ 192
                      8*************************9....677****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.41E-9139196No hitNo description
SuperFamilySSF474591.16E-14139204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-15141203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.704141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAAFSPYQEP TFVFDSFLVP TASNKMRSNA VEGTTFGTKT YFAPMLANEC SQEIPLHAQI  60
HETRGLLDHN TEVATGEHQV SQMVTSMEEK NMRNIVDIKK EKERKYNIGV LKKPRCKKQK  120
KLAEEAASPS GYVHVRARRG QATDSHSLAE RVRRAKISAR MKLLQSLVPG CEKITGKALI  180
LDEIIKYVRT LQTQVEFLAA KLASVTPMFS DSGVDFTTSP LAHQEDNNGN LLRGNDHDGR  240
IQELANADLY ELVNFQSLYW RMQNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103118RKYNIGVLKKPRCKKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387149.20.0transcription factor bHLH137-like
TrEMBLV4TFH50.0V4TFH5_9ROSI; Uncharacterized protein
STRINGXP_006438852.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2275434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-42bHLH family protein