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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10032940m |
Common Name | CICLE_v10032940mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
LSD |
Protein Properties |
Length: 163aa MW: 17148 Da PI: 8.067 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10032940m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 42 | 1.5e-13 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL YP GA+sV+Ca+C++V
Ciclev10032940m 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
************************9 PP
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2 | zf-LSD1 | 46.5 | 5.8e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+tV
Ciclev10032940m 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
************************9 PP
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3 | zf-LSD1 | 41.6 | 2e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Cr lL+Y +GA+sV+Ca+C++V
Ciclev10032940m 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
***********************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009814 | Biological Process | defense response, incompatible interaction |
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
GO:0045595 | Biological Process | regulation of cell differentiation |
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MPVPLAPYPT PPAPYTPPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT AVGSRMMPKN TQLQNNSNVL TQLDDAGLNK YY*
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Functional Description ? help
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Source |
Description |
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |