![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10032927m | ||||||||
Common Name | CICLE_v10032927mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19304.4 Da PI: 10.1061 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.4 | 1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskR+ngilKKA+ELSvLCdae+a++ifs++gk y y+s Ciclev10032927m 9 KRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 62 | 2.4e-21 | 82 | 149 | 8 | 75 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 ++ ++ + ++ e++kL++ +e+++ +Rhl GedL+sLs+k+L++Le+qL+ ++++iRskK +++ e Ciclev10032927m 82 DQRSRLVQLWKSEIEKLERSVETMEARLRHLTGEDLSSLSIKDLKKLERQLKIGVERIRSKKIKMYDE 149 466667899*****************************************************998766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.085 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.05E-38 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.5E-17 | 88 | 151 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.661 | 88 | 166 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
MGRGKVELKR IENKTNRQVT FSKRKNGILK KAFELSVLCD AEIALVIFSP SGKAYHYASD 60 HHTMDKIIAR YRREVGQLNS ADQRSRLVQL WKSEIEKLER SVETMEARLR HLTGEDLSSL 120 SIKDLKKLER QLKIGVERIR SKKIKMYDEM APTEAEEQCL WCIPTN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-22 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 1e-22 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 1e-22 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 1e-22 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 1e-22 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 1e-22 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 1e-22 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 1e-22 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006493218.1 | 1e-114 | truncated transcription factor CAULIFLOWER A-like isoform X3 | ||||
Refseq | XP_024042220.1 | 1e-114 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
TrEMBL | A0A2H5Q9E7 | 1e-119 | A0A2H5Q9E7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TEQ5 | 1e-119 | V4TEQ5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006436860.1 | 1e-119 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17630 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03710.3 | 7e-40 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10032927m |
Entrez Gene | 18043379 |