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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10032899m | ||||||||
Common Name | CICLE_v10032899mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 19134.8 Da PI: 8.7202 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Ciclev10032899m 42 FECKTCNRQFPSFQALGGHRASH 64 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.45E-8 | 40 | 111 | No hit | No description |
Pfam | PF13912 | 2.8E-13 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.1E-10 | 88 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 89 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKRTFQELDH SLNMANCLMF MSQGGHFDAV NSVDMTAAGR VFECKTCNRQ FPSFQALGGH 60 RASHKKPRLT DGTGGGADTQ QSPAKPRTHE CSVCGLEFAI GQALGGHMRR HRAVALHGNE 120 KVSTLTLSDT APLVKKANSR RVLCLDLNLT PYENDLECHR LGSNKAAAPV VDWFL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436055.2 | 1e-127 | zinc finger protein ZAT1 | ||||
Refseq | XP_006486058.2 | 1e-126 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A2H5NYR7 | 1e-128 | A0A2H5NYR7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TCK3 | 1e-128 | V4TCK3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006486058.1 | 1e-129 | (Citrus sinensis) | ||||
STRING | XP_006436055.1 | 1e-129 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 3e-38 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10032899m |
Entrez Gene | 18044702 |