PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032817m
Common NameCICLE_v10032817mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 195aa    MW: 22341.6 Da    PI: 9.9976
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032817mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.74.8e-36181391127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lp G+rF+P+ +e++v+yL+kk+ +++l+  ++ik++d+y + +P++++++   + +e yfF++ +++  +  +++r+tksgyWk tgk ++++
  Ciclev10032817m  18 LPLGYRFSPNGQEIIVQYLTKKILNQRLPS-NIIKDIDLYAYdHPREFKNC---KPEEGYFFTQLENRDGK-GQPKRTTKSGYWKDTGKVEQII 106
                      699**************************9.89******98879****833...66899******999876.58999***************** PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                        +++ vg kk+Lvfy+g+ p+g++++Wvmhe+ 
  Ciclev10032817m 107 W-NNSIVGFKKILVFYEGKPPTGTRSRWVMHEFG 139
                      9.8999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3714169IPR003441NAC domain
PROSITE profilePS5100536.97118169IPR003441NAC domain
PfamPF023651.6E-2019139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MASQGVFGSI NQEEEFDLPL GYRFSPNGQE IIVQYLTKKI LNQRLPSNII KDIDLYAYDH  60
PREFKNCKPE EGYFFTQLEN RDGKGQPKRT TKSGYWKDTG KVEQIIWNNS IVGFKKILVF  120
YEGKPPTGTR SRWVMHEFGV NPSYLSAFAL DITTQTEVLN YVACKIHHKK ESGNKRSEAG  180
KKKNLPVRKK TKAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-27111758174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042277.11e-141NAC domain-containing protein 83
TrEMBLV4STP51e-143V4STP5_9ROSI; Uncharacterized protein
STRINGXP_006437958.11e-144(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-32NAC domain containing protein 83