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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ciclev10032782m |
| Common Name | CICLE_v10032782mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
LBD |
| Protein Properties |
Length: 202aa MW: 22415.6 Da PI: 6.8765 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10032782m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 137.6 | 4.4e-43 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+CaaCk+lrr+C+++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da++s+vyeA+ r+rdPvyG++gv+ +lq+q+++l+ael
Ciclev10032782m 42 PCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQELPEPQRADAVTSMVYEANSRIRDPVYGCAGVVCHLQKQVSELQAEL 135
7********************************************************************************************* PP
DUF260 95 allkee 100
a++++e
Ciclev10032782m 136 AKAQAE 141
**9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MQITQQYSTP SFSSPRSINA SSSQSSPSFA TPPSPPSIVL SPCAACKILR RRCVEKCVLA 60
PYFPPTEPQK FVIAHRVFGA SNIIKFLQEL PEPQRADAVT SMVYEANSRI RDPVYGCAGV 120
VCHLQKQVSE LQAELAKAQA ELASMQSQQQ NLIALICMEM AQSQEQVLHR HQQQQPPQQF 180
IDTSCFLDEY SLGSTWEPLW T*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
