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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10032713m |
| Common Name | CICLE_v10032713mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
MYB |
| Protein Properties |
Length: 218aa MW: 25368.7 Da PI: 8.2472 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10032713m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +l+++++ +G g+W++I + g++R++k+c++rw++yl
Ciclev10032713m 9 KGLWTQEEDRILLEYIRVHGRGRWNRIHKVTGLKRCGKSCRLRWLNYL 56
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 59.3 | 8.8e-19 | 63 | 107 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g +T+eE+ l+++++++lG++ W++Ia +++ gRt++q+k++w+++l
Ciclev10032713m 63 GEFTEEEENLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 107
78*******************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MKAENEYKKG LWTQEEDRIL LEYIRVHGRG RWNRIHKVTG LKRCGKSCRL RWLNYLSPNV 60
KHGEFTEEEE NLIIRLHNLL GNRWSLIAGR VPGRTDNQVK NHWNTHLCKK LGINKKQKKK 120
FVSSSKTQAQ TQSSRIIKDD NGLTHDNLNF EHLQDSEMAL DQEPGDRKKS NEEAESISHH 180
CNESLLLPTE DDFLNLCSPI LLEFLEGQPL DLIWHNN*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 108 | 119 | KKLGINKKQKKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
| Publications
? help Back to Top |
- Savage N, et al.
Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana.
PLoS ONE, 2013. 8(10): p. e75452
[PMID:24130712] - Cheng Y, et al.
Brassinosteroids control root epidermal cell fate via direct regulation of a MYB-bHLH-WD40 complex by GSK3-like kinases.
Elife, 2018.
[PMID:24771765] - Kiefer CS, et al.
Correction: Arabidopsis AIP1-2 restricted by WER-mediated patterning modulates planar polarity.
Development, 2015. 142(5): p. 1022
[PMID:25715402] - Kwak SH,Song SK,Lee MM,Schiefelbein J
TORNADO1 regulates root epidermal patterning through the WEREWOLF pathway in Arabidopsis thaliana.
Plant Signal Behav, 2015. 10(12): p. e1103407
[PMID:26451798] - Zhu Y, et al.
The Histone Chaperone NRP1 Interacts with WEREWOLF to Activate GLABRA2 in Arabidopsis Root Hair Development.
Plant Cell, 2017. 29(2): p. 260-276
[PMID:28138017] - Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
Plant J., 2017. 92(2): p. 305-316
[PMID:28771873] - Mira MM, et al.
Expression of Arabidopsis class 1 phytoglobin (AtPgb1) delays death and degradation of the root apical meristem during severe PEG-induced water deficit.
J. Exp. Bot., 2017. 68(20): p. 5653-5668
[PMID:29059380] - Kohanová J, et al.
Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
Ann. Bot., 2018. 122(5): p. 903-914
[PMID:29394308]
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