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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10032637m | ||||||||
Common Name | CICLE_v10032637mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26606 Da PI: 6.0596 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.4 | 1e-19 | 30 | 74 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + e+k qvtfskRr g++ KA EL+vLC+aev +++fs++gk+ Ciclev10032637m 30 KLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIVVFSPNGKI 74 56899999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.1E-30 | 21 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.432 | 21 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.96E-35 | 22 | 98 | No hit | No description |
SuperFamily | SSF55455 | 6.93E-26 | 22 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-19 | 23 | 43 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-22 | 31 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-19 | 43 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-19 | 58 | 79 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MNNNNNNSNN IDPNNKKKIT KGRQKIQIKK LEDKNSLQVT FSKRRSGLFS KAMELCVLCG 60 AEVGIVVFSP NGKIFLAGHP DFDKILNRYL DQNHSSLDEV NAIPCVQQHN KEYEDATQEL 120 ENEKKRRKMI EEEKKKNKNN GRFWWQEGNI VDDMGIEEVE EYLKAMKKLK GKVEMRVNEM 180 MMDEYLVPNM NLGNDHSDVF GNINVNVNEN ISVSGGIDGG VDFDFGFGEH FN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-16 | 22 | 93 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 3e-16 | 22 | 102 | 2 | 82 | MEF2C |
5f28_B | 3e-16 | 22 | 102 | 2 | 82 | MEF2C |
5f28_C | 3e-16 | 22 | 102 | 2 | 82 | MEF2C |
5f28_D | 3e-16 | 22 | 102 | 2 | 82 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | EKKRRKM |
2 | 123 | 127 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435602.1 | 1e-169 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | V4T6K7 | 1e-167 | V4T6K7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435602.1 | 1e-168 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15814 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-29 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10032637m |
Entrez Gene | 18044629 |