PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032575m
Common NameCICLE_v10032575mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 245aa    MW: 27205.8 Da    PI: 9.5632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032575mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-2056105255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Ciclev10032575m  56 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 105
                      7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-3355114IPR001471AP2/ERF domain
PROSITE profilePS5103225.01456113IPR001471AP2/ERF domain
SMARTSM003806.8E-3956119IPR001471AP2/ERF domain
CDDcd000182.73E-2156114No hitNo description
SuperFamilySSF541713.2E-2256114IPR016177DNA-binding domain
PfamPF008472.3E-1456105IPR001471AP2/ERF domain
PRINTSPR003671.2E-115768IPR001471AP2/ERF domain
PRINTSPR003671.2E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSAMVSALSQ VIGNTQNSPT SLQLSQNPNF TTSSSNTSEQ DLSQRVKDQG NVRRRHYRGV  60
RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE AAALAYDEAA LRFKGSKAKL NFPERVQANL  120
TTHRYQDHYY HAAAATTSQQ VSNPHPPPPP RPLPLTQEVM YPNLFQYQQA NYGIPSGFYG  180
EYRYLPVTLP TTSSSSSSSS ATSSQQPQQH ELLRYGMQLE SSSSSASDPH ESTRRNSDTS  240
HPDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2655116163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2655118468ATERF1
3gcc_A3e-2655118468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436961.21e-180ethylene-responsive transcription factor ERF114, partial
TrEMBLV4TKA81e-179V4TKA8_9ROSI; Uncharacterized protein
STRINGXP_006436961.11e-180(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2760723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-27ERF family protein