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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10032507m |
Common Name | CICLE_v10032507mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
MIKC_MADS |
Protein Properties |
Length: 258aa MW: 29257.4 Da PI: 8.3381 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10032507m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
Ciclev10032507m 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 90.5 | 3.1e-30 | 87 | 173 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
a + s+qqe+ kLk+++e Lqr+qR+llGe+L++L+ keL++Le+qL+ slk+iRs++++++l+ + elq+ke+ l+e+nk+L+++
Ciclev10032507m 87 ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT 173
555689******************************************************************************986 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-33 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.17E-45 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.339 | 89 | 180 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.7E-24 | 91 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001708 | Biological Process | cell fate specification |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0048481 | Biological Process | plant ovule development |
GO:0048833 | Biological Process | specification of floral organ number |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPEP NVSAREALEL SSQQEYLKLK ARYEALQRSQ RNLLGEELGP 120 LNSKELESLE RQLDMSLKQI RSTRTQYMLD TLTELQHKEQ LLSEANKTLK QRTMTLRHAD 180 FAGLQLMEGY QVNTLQLNPS AEDCGYGLKP AQPQGDTFFH ALECEPTLQI GYQPADPISV 240 VTAGPSLNNY MQGWLPC*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 4e-44 | 75 | 172 | 1 | 100 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-44 | 75 | 172 | 1 | 100 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-44 | 75 | 172 | 1 | 100 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-44 | 75 | 172 | 1 | 100 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KR136378 | 0.0 | KR136378.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 MADSSEP3-like protein mRNA, complete cds. |