PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032466m
Common NameCICLE_v10032466mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 264aa    MW: 29225.1 Da    PI: 7.0495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032466mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002993115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C k F ++  L  H++ H
  Ciclev10032466m  93 FECQYCFKEFANSQALGGHQNAH 115
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-490119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.78E-690120No hitNo description
PROSITE profilePS5015711.40693120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEKEMTTVFS HTSDGENASS AGSCVEKKLR LFGFELNPCN NNNTNDETCR LKGSAEGDES  60
VNSSNTASSG SEKPSSSRDK SSPPTGESDY KKFECQYCFK EFANSQALGG HQNAHKKERM  120
KKKRLQLQAR KASLNSYLQP YQNMYNLSFN NTYHGSNTAS TWFYDPSCYP CDNQFTLYEE  180
SQISFNPYDQ DPRVSKWCST ATIPTQTPFH QQDSTPSMFT RTDRSGDHTP ALIIKPSPLS  240
AAASKQSCKS LDLQLGLSLE GGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438491.10.0zinc finger protein 5
TrEMBLV4TPH90.0V4TPH9_9ROSI; Uncharacterized protein
STRINGXP_006438491.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.12e-16zinc finger protein 5