PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032430m
Common NameCICLE_v10032430mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 268aa    MW: 29197.3 Da    PI: 5.8785
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032430mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.8e-1088135350
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      ++ + rr   NReA r++R++Kka ++ Lee+vk+L + N++L  +l+
  Ciclev10032430m  88 SVSKPRRSSGNREAVRKYREKKKAHTAYLEEEVKKLHTLNQQLVRKLQ 135
                      5567789999*********************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-1280153No hitNo description
SMARTSM003383.4E-884153IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.61188135IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.81E-791135No hitNo description
PfamPF077169.2E-1492135IPR004827Basic-leucine zipper domain
CDDcd146862.87E-998135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRQNMDDGEV ELSDHALLLN QEFSGNFHNS ASVDSFLDEF LKNTKTCTHT HTCNPPGPDA  60
AHTHTCYHTH TQVIASEEDN HSNSKENSVS KPRRSSGNRE AVRKYREKKK AHTAYLEEEV  120
KKLHTLNQQL VRKLQGQAIL EAEFLRLRSL LADFRGKIDD ELGVFPYQKQ CNGVAILKEG  180
DCGLQSNGEA VGLGCQAKLP CFHPQAGSSS HAGTDGSEKM LSSTEGNCQP AVIDCQASTY  240
DVVSAEGRTL DAVEALVSPS SQAELAD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438937.10.0basic leucine zipper 24
RefseqXP_006438938.10.0basic leucine zipper 24
RefseqXP_006482937.10.0basic leucine zipper 24
RefseqXP_006482938.10.0basic leucine zipper 24
SwissprotQ8GTS24e-55BZP23_ARATH; Basic leucine zipper 23
TrEMBLV4SWC30.0V4SWC3_9ROSI; Uncharacterized protein
STRINGXP_006482937.10.0(Citrus sinensis)
STRINGXP_006438937.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.12e-35bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]