PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032412m
Common NameCICLE_v10032412mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 270aa    MW: 29716.9 Da    PI: 7.3946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032412mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-11152199455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Ciclev10032412m 152 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 199
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.01E-10146203No hitNo description
SuperFamilySSF474596.28E-18146217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-18148216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDQGSYNFAE IWQFPVPGSG SMSESGGGLG QKGAHFGQHL SQFGTNREVS GDDPVNLEHK  60
MAHGNGVRKR RDVEDESAKH VSTSSGNGNG NRVNDSDGKR IKTSGSRDDN HHSKAEAEPS  120
SVKPAEQNSQ PPEPPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK  180
VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNTRMNPGI EVFPPKDFTQ QTFDTAGMPF  240
GSQATREYSR GTSPDWLHMQ IGGGFERMT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.15020.0abscission zone| flower| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438535.10.0transcription factor BHLH089 isoform X1
RefseqXP_006483289.10.0transcription factor BHLH089 isoform X1
SwissprotQ84T082e-83BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2H5N8G10.0A0A2H5N8G1_CITUN; Uncharacterized protein
TrEMBLV4TJK20.0V4TJK2_9ROSI; Uncharacterized protein
STRINGXP_006483289.10.0(Citrus sinensis)
STRINGXP_006438535.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-95BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]